AACCACAGAG CGGTCTCCAT GGACTCTGCC CTTTTGGACC TCCCCGTGGT TCCGCAATGG CTTAGGGGAG TTCCCAGAAT GTGTGACGGA GTAGGGATAG GTCAGATCTG CAGCAAGGGA AACCTCAATC TCTGCAATCC CAGCAAGTTC CTCAACCTTT AATGAGCCTA CGCTTCTTGC TCAGCAAAAA TAGAAAGAAA M GTGTCTAATG GTTTGTAAAG ATAGAACTCT CCCTCTCCTA GTCTCGTGGA CATAGCATTC ATTACTTTGT CTCACACTTC TCAAGGATTC GGATGGATCG ATCGCTTCTC TAGCCCCACA GTGCCCTTTG CTCCAGAGTG TCTGCAAGCC TTTTATTCTC AGCCTGCACC CGGGAATCTC CTCCGACCCG GAAATCATTG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61024859 | NES16103379 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | A | C | C | C | A | C | A | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs48574770 | SNP | C | C | C | C | C | C | A | C | C | C | A | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61024859 | NES16103379 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr7:79585612 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Arpin | actin-related protein 2/3 complex inhibitor | 600 bp upstream | ||||||
Cpgi19319 | CpG island 19319 | 469 bp distal | ||||||
Gm31966 | predicted gene, 31966 | within coordinates | ||||||
Rr649743 | regulatory region 649743 | 784 bp distal | ||||||
Rr649744 | regulatory region 649744 | within coordinates | ||||||
Rr649745 | regulatory region 649745 | 253 bp proximal | ||||||
Tssr73196 | transcription start site region 73196 | 609 bp upstream | ||||||
Tssr73197 | transcription start site region 73197 | 493 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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