rs48575204 SNP Detail

Summary

• ID
  rs48575204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53379559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAGCAT TTTAACACTG
  AGTTGGATTC CTGTGCACTA CCATCTGGAG GACAGTACCT CACTCTGGTA AAGTGAGTAC
  ACGTGATGTG CTGTCTCTTA AAATTCCAAA GTGTTCATGG ACGGCAATTT ATTTGATTCT
  CAGGTCAGTT CTATGACATG TGCAGCAAAG GGCAGTTTTG TGGATAATCC AACAGAGACA
  Y
  GGAATCTTTT AGGAAACACC AGTGTCCTAT GCCTAGCTAT GATGGCAGTT TAGTTGTCAG
  ACTCCAAGTT CAGATCTTAT TTTATGACAA AGTGGTGCTG TCTACCATCG TACTTTGAGA
  CACCGTGTGC TTTTGAATGT ATGCTATGTG CTCCAATCAT TCTTGATCTT TTCAAATAGA
  GAGTGTGATT CAGAACTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137751804	ENSMUSSNP6958852	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324042723	CHEV_12_54433763	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48575204					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53379559 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267617	regulatory region 267617	959 bp distal