rs48575394 SNP Detail

Summary

• ID
  rs48575394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58420157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACTCAT CTTTTTCCCC
  CTAGGAATCT TGTTTTTGTA GGAAGCTTTG GATTTTGTGT CAAACTGCTG ATTTTTAAAA
  GGTGAGGGTG TGAGATAAAC TGTTGCTACT AAGGAACAGG CCAAGCTACG CCTAGCAAGA
  TTTATAAATG AATGACCTGT TTTCTTGAGG CCTTGGTCTC TATGAAGGGC CACTGCCATC
  R
  TGAGCACCTT CTTCTATGAC ATCAGTGTCG GGAAAGAATT GAGCCTGGGG GAACTTAAGT
  ACATAATTTC AGCCCTTTAA AAAATGAACA GTAGTGACTG TGTCGATCAA CACTATCAAC
  CACCTAGCTT GATCCAAAAC GGAACTATGC AATGTCAATG TCATCAGTTA ATATGGCCAT
  ATGCTTTGAG AGGGCAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52645699	NES15464203	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48575394					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52645699	NES15464203	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58420157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	1008 bp proximal
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	357 bp distal
Rr281488	regulatory region 281488	643 bp proximal
Rr388493	regulatory region 388493	941 bp downstream
Tssr120072	transcription start site region 120072	1909 bp upstream
Tssr122822	transcription start site region 122822	418 bp upstream
Tssr122823	transcription start site region 122823	1753 bp downstream
Tssr122824	transcription start site region 122824	1778 bp downstream
Tssr122825	transcription start site region 122825	1920 bp downstream
Tssr122826	transcription start site region 122826	1997 bp downstream