rs48577489 SNP Detail

Summary

• ID
  rs48577489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108540797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACAGCAG GCTATCTCAC
  GGCCTCTGTT CAAAGTGAGG CTCACCACAG ACAGCTCATC CCGAGGAGAC TCTGTAGTGT
  TCATCTGTGA GAAATCAGAT CCTATCAGTA GCAAAGGCTG TGCTTCTTAT TCTTAGTGCT
  CCTAAGACAG TGGCAGGTTC AAGTAGCTCT GTCTAGCAAG GGGGAGTTTG TTTGGCCTTT
  W
  TTTCTAATCT TATTCTACAG AGGCAGAAAT CTTGTCCTGC ACACCTGAGA CTTTTAAAAA
  GCAATATCCT GACTCCTTAT ATAAGTGTAC TCCTCTCTCG TCTCCTCTTG CTCTTGATGT
  TACACCCAGC AAGGGCCTAG TGACCTCTGT ACAGGATTAT AAACGACTGA AAGTGCTCAC
  TGGAGTCTTG ACAGAGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61448819	NES16836373	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs48577489					SNP	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61448819	NES16836373	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108540797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22350	CpG island 22350	1226 bp distal
Rr401686	regulatory region 401686	1411 bp downstream
Rr686857	regulatory region 686857	1490 bp distal
Slc25a20	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	within coordinates
Tssr87151	transcription start site region 87151	1505 bp downstream
Tssr87152	transcription start site region 87152	1379 bp downstream