rs48578409 SNP Detail

Summary

• ID
  rs48578409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85005969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAGTCA GGAGGCTGAT
  GTGGGTGGGC TCAAGTCTGA GGTCACCCTG ACCTGTGGAG CAGGATCCTG TATTCAGGAT
  CCTGAACAAA CAAACAAATA AAGGGAAGTG CTGAAGAGCT TCCTGTCACA TGGTCACACA
  TTCCAAACTA TAAGCTGTAA GCCAGTAAAA CTTACAATCT TAGGAGAAAC CTAGACTTGG
  R
  AGAGAATGAC AGCACCAACT CTGAGGAGAG GTCATATGCA GGAAGAAAGC AGGCAATGGT
  GACACAGACT TGTAGTTTCA ACTATCGTGG AGGCTGAGCT GAAAGGGCAT TTAAGATTAG
  GAAATTGAGG GACCCTGTCT CAAAAGGAGG ATGTTATAAG GTAGGGGTGG TTGCTGGAGA
  GATGACTCAG GGGAGCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52450109	NES15421997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48578409					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450109	NES15421997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85005969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arel1	apoptosis resistant E3 ubiquitin protein ligase 1			Intron
				Noncoding-Transcript-Variant
Tssr117049	transcription start site region 117049			363 bp downstream