rs48579322 SNP Detail

Summary

• ID
  rs48579322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41580900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCATGGA AGGCTCTAGG
  CAAACACCTC TATTTTCATG ACTTCAATTC CCAGCTCCTT GACAAAGATT TCTGCCAGTC
  TGTCTGTCAT TTTGTTAGCA CCGTTCCTAA ACTTTGGGGG TAAATGCATA CACAGGAATA
  TTTTCCTACT GCCTCCGACT CATTTGGACA ACTGTTAAAG CCTTCTAGCT GGTTACTCAG
  R
  TATCTGCTAT AGCAGTGCAC AGGAAGCTCA AACCAGAGAA AGTAAGTATA TAACTCTATG
  AAGCATTGCC GAACTACAAC TCAAAGCTAT AAAGACTTAC AATTTAAGAT CTCTATCTGA
  TTAGTAAACT TTGAAGAAAA AGAAAAGAAT AAACTCCTCC CCTTAAATGC TTAAATGCTG
  TCAATGTCTA CAAATTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397260	NES15898146	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48579322					SNP	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397260	NES15898146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41580900 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	255 bp downstream