rs48580112 SNP Detail

Summary

• ID
  rs48580112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180772643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG TGCTGGGGTG GCAGGTCTTC
  Y
  GGGACCCTTT GCTCCTCTGG GTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146388159	ENSMUSSNP6408085	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320160491	CHEV_1_182875209	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48580112					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180772643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	1866 bp distal
Cpgi1128	CpG island 1128	1455 bp distal
Rr424647	regulatory region 424647	1468 bp distal
Rr424648	regulatory region 424648	1033 bp distal
Rr424649	regulatory region 424649	1045 bp distal
Rr424650	regulatory region 424650	899 bp distal
Rr424651	regulatory region 424651	within coordinates
Tmem63a	transmembrane protein 63a	within coordinates
Tssr324	transcription start site region 324	1007 bp downstream
Tssr10508	transcription start site region 10508	820 bp upstream