rs48581891 SNP Detail

Summary

• ID
  rs48581891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121380823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT CTTGTATTTT AAATCAAATA
  Y
  ATGGCTTTTG GGGTTTTTTT TGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147390411	ENSMUSSNP3802501	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320483659	CHEV_2_121376078	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48581891					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121380823 () rs orientation: forward

Symbol	Name	Function Class
Frmd5	FERM domain containing 5	within coordinates
Rr406973	regulatory region 406973	within coordinates
Rr563848	regulatory region 563848	999 bp proximal
Tssr25942	transcription start site region 25942	721 bp upstream
Tssr25943	transcription start site region 25943	922 bp downstream
Tssr25944	transcription start site region 25944	935 bp downstream
Tssr25945	transcription start site region 25945	1011 bp downstream
Tssr25946	transcription start site region 25946	1041 bp downstream