rs48584047 SNP Detail

Summary

• ID
  rs48584047
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52177670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTTTTC ACAGACAGAC
  CCATTTTCAC ACACGCGCGC GCGCGCGCAC ACACACACAC ACACACACAC ACACACACAC
  ACACAATCAT CTTTTTGCAC GCCGGCGGGA GCAGCGGAAG TCATTAACAT CACGATTGTG
  CAGCAATTAA AGTTAGGCCT GGGGAAGCCG TTCTCGGCCG GCCACAGGCA TTCTTCACCG
  M
  GCAGCCTCCA CAAGGCTGGC TCTGGCTTTG CTAATTTAGG CAGGCAGAGG GAAAAGTTTG
  TTCTCCCATT TTGAATACTG AGCCAGACAG AAAGAGAGGA CAAGAAACTT TTTAAGAGTG
  AAAATAAACT CAAGAGGCGA GCTTACCTTA ACATGGAGGG AGCCATTTTT CAGAGTTTTG
  AGAACTTGTG GTTTGGACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886896	NES15971106	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48584047					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886896	NES15971106	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52177670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17422	CpG island 17422	55 bp distal
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxa5	homeobox A5	1098 bp downstream
Hoxaas3	Hoxa cluster antisense RNA 3	434 bp upstream
Tssr56510	transcription start site region 56510	508 bp upstream
Tssr60990	transcription start site region 60990	256 bp downstream