rs48584178 SNP Detail

Summary

• ID
  rs48584178
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7739728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG ACAGGTGTGG AATGCCACCT
  T
  CCACTGCCAC CTGTTCTACA CCTGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146757841	ENSMUSSNP3068838	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323244383	CHEV_10_7583762	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48584178					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7739728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1279	CpG island 1279	1312 bp distal
Rr216483	regulatory region 216483	928 bp distal
Rr220418	regulatory region 220418	1728 bp distal
Rr223547	regulatory region 223547	196 bp distal
Rr223550	regulatory region 223550	266 bp proximal
Rr223552	regulatory region 223552	775 bp proximal
Rr384104	regulatory region 384104	723 bp upstream
Tssr92330	transcription start site region 92330	1861 bp downstream
Zc3h12d	zinc finger CCCH type containing 12D	within coordinates