rs48584479 SNP Detail

Summary

• ID
  rs48584479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:21848946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TCCGTGTTAG AATGGCAGGG
  W
  TTTTTCCCCA AATGGTTAAA CACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss139200338	ENSMUSSNP4821435	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
ss324566593	CHEV_14_22618100	CHEVERUD	SCREENING_POP	f	SNP			T		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48584479					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21848946 () rs orientation: forward

Symbol	Name	Function Class
Samd8	sterile alpha motif domain containing 8	152 bp downstream
Tssr124451	transcription start site region 124451	1072 bp downstream
Tssr124452	transcription start site region 124452	1052 bp downstream
Tssr124453	transcription start site region 124453	883 bp downstream