rs48584881 SNP Detail

Summary

• ID
  rs48584881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26139018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCATTCAT GCCCATCTGT
  AGTCAGAGAG CACTAAAAAC CCTGGGTGCT TTTTAGGACT AGGTGTTTAC TATGAGTGAT
  TGTCCTTTTA TTTACAGCCA CGATCCTCTG TTTTCACTGA GTTCCCAAGA TGCCACAGAA
  ACCAGTGGTC CTGTTTTCAG TATTGAGGAT GGCCTTATTA TTTTCCCCCA TTCTTTTTTG
  Y
  AAGCTATAGA TTAGTCGATA CCAGGCGAGA GTGTAATTGA AGATAATTTT TACATTGTAA
  GCACTCCATG TGTGTCCATG TGCGTGAGTA TGGGTGTGTG GATGCTGCAG CTCACAGCTT
  GGAGGTCAGA GGACAGACCT GTGTGTCCTT CCACCTTGTT GTGGAAATGG TCTCTGTTGT
  TTGCCCCTGT GTGTGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582757	NES16331123	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48584881					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582757	NES16331123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26139018 () rs orientation: forward

Symbol	Name	Function Class
Nsd3	nuclear receptor binding SET domain protein 3	within coordinates
Tssr76701	transcription start site region 76701	395 bp upstream