rs48585284 SNP Detail

Summary

• ID
  rs48585284
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111860267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAAATA ATTTTCTTTA
  ATCACCTACT GTTATTCAGG TTTTGGAGAT GATGGCATTA CAGTGAAGTG CAAGATTGTT
  AGCTGTCAAT ATTTATGCAA AATAAAAATC ATATTCAATG CATTTTAAAG TTTTCTTCAT
  AATTTTATAC CTCTACTCTT GATATCTTTG TCTTTGTTTG ATATTTGACT ACTAAAAGTT
  W
  TTTTTATTTA AGAATGTGTA ATAGAGATGG TAAAGGATTG CGTTTCCGTG TTAAAGGAAA
  CCTATCCTGT CCAAACCTCA CCCACAAAGG CATTGCAAGT TTCTATCTTT CTGGGGTTTA
  CCTTTGTCTG ACCTTGGCTC CTTGCTTTCT GCTCTATTGG GGACAATGGC AGGTGAGAAG
  TCGGGTGATT GATATATGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134277725	ENSMUSSNP6641349	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325913348	CHEV_X_110064179	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48585284					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111860267 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	267 bp distal
Rr6449	regulatory region 6449	515 bp distal