rs48585987 SNP Detail

Summary

• ID
  rs48585987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95899674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAATAGAA TGTATTCTTT CTTAAAGTAC TTCAGCCTCA
  GGAATGACTT TTCAAAGACC AAGGATATCC CCACCCCAAA TCCTTACAGA TGTATAGGCA
  Y
  GAAGAGGAAT AAGGAAAAGA CATAGCAAAT GTTTGCATGT AGCTGGAAGC CAAAAGTGCT
  TAGCCCCCGG GTCAGTTACC TTATAACGTG TCTGCTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144993582	ENSMUSSNP5539394	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324489693	CHEV_13_96533121	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48585987					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95899674 () rs orientation: forward

Symbol	Name	Function Class
Gm32702	predicted gene, 32702	1922 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr484141	regulatory region 484141	631 bp proximal
Rr484142	regulatory region 484142	1520 bp proximal
Rr484143	regulatory region 484143	1936 bp proximal
Tssr120725	transcription start site region 120725	1955 bp upstream