rs48586158 SNP Detail

Summary

• ID
  rs48586158
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCTTTT TGCCCAGGCG
  AGGGGTAGGG CCAGCTCTTC CAGTTGCTGC ATCTGATGAG AAACAGGGCC AGCTCTGCAC
  AGCTCTCAGA TGTCAACATG GCTTCAGGTG ACAGTCTAGA CCAGGGATGT CTACATCAGA
  AGCATACTTT TTATAATCTT ACAGATTCAC TATCTCAAAT TTAAAATGTC ACATATTTTA
  M
  AAATAATTGC AAGGATAGTT GACGAAATAC TCACTGAGAA CATTGATTTC AGACAAAATC
  ATTTTCCTGT GACCCTTCAC ATTTACAGAA TTGGGAGGTG CTATTTGAGC AGAATTATAA
  TTTAATAAGT GCAGAGACAG AGTTCTGTTT ATCTTTGGGT ATCTATCTTC TTAGGAAACA
  AATAACAACA GCCAGAGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647243	ENSMUSSNP7204838	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss322398748	CHEV_7_117910162	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48586158					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365855 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ampd3	adenosine monophosphate deaminase 3			1558 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene			Intron
				Noncoding-Transcript-Variant
Cpgi19579	CpG island 19579			1435 bp proximal
Rr653308	regulatory region 653308			1145 bp proximal
Rr653309	regulatory region 653309			1773 bp proximal
Tssr68503	transcription start site region 68503			1415 bp upstream
Tssr68504	transcription start site region 68504			1458 bp upstream
Tssr68505	transcription start site region 68505			1490 bp upstream
Tssr68506	transcription start site region 68506			1521 bp upstream
Tssr68507	transcription start site region 68507			1967 bp upstream