rs48586270 SNP Detail

Summary

• ID
  rs48586270
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101866271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG GAGACACCCA CTGCCCTTGT
  S
  TAGGCACAGT GCGCATTCTG AGTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss61446062	NES16829109	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G		G	G	C
ss323155293	CHEV_9_101891402	CHEVERUD	SCREENING_POP	f	SNP									G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs48586270					SNP	C	C	C	C	C	C	C	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61446062	NES16829109	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101866271 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	188 bp upstream
Gm69124	predicted gene, 69124	89 bp upstream
Rr198442	regulatory region 198442	471 bp distal
Tssr86718	transcription start site region 86718	121 bp upstream