rs48586616 SNP Detail

Summary

• ID
  rs48586616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100854493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG GAGGATGCGG GTGGGCAGGC
  R
  GGCAGCAGAG AGATCCCTTT ACACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss137997084	ENSMUSSNP5261197	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324138824	CHEV_12_102126444	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48586616					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100854493 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	within coordinates
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	within coordinates
Rr471363	regulatory region 471363	314 bp distal
Tssr117330	transcription start site region 117330	370 bp upstream
Tssr117331	transcription start site region 117331	347 bp upstream
Tssr117332	transcription start site region 117332	333 bp upstream
Tssr117333	transcription start site region 117333	298 bp upstream
Tssr117334	transcription start site region 117334	276 bp upstream
Tssr117335	transcription start site region 117335	197 bp upstream
Tssr117336	transcription start site region 117336	153 bp upstream