rs48587266 SNP Detail

Summary

• ID
  rs48587266
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99512893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTGCTT CATAACTGTA
  ATGTCGTTAC GGTTATGAAT TGTTAATGTA AATATCGGAC ATGAAAAATA CCTGAGATTC
  CTCGGGGGTC GCGACCCACA GGTTGAGAAC CACTGTTTTA GCTGCATGCC TTAAATTGAG
  AACAGAAATC TTGTGCATTT GGGAGCTGAA CTTCTTTTGT TTGTGCCACT CAGAACACTT
  M
  AGAGGAGAAG GGGAGCCCTT GGTAGGCAGT TCTGAATGTC CTGTGCTCAC TTTGCAGAAG
  AGGAAGCTGT GGGCTAGCCA ACCACTTGCC CCAACACTGG CCAGTCACTT GCTTGGTGAT
  TGTAGTGACG GGGTCTGGTC CAGAATAAAG ATGGAGAGGC TCTGTTAGGA AGCAACAGCG
  CTTTAATAGA CAAGAAACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61443436	NES16824724	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs48587266					SNP	C	C	C	C	C	C	A	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443436	NES16824724	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99512893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22198	CpG island 22198	719 bp distal
Dzip1l	DAZ interacting protein 1-like	within coordinates
Gm68333	predicted gene, 68333	14 bp upstream
Rr206941	regulatory region 206941	within coordinates
Tssr86687	transcription start site region 86687	1248 bp downstream
Tssr86688	transcription start site region 86688	987 bp downstream
Tssr86689	transcription start site region 86689	964 bp downstream
Tssr86690	transcription start site region 86690	1803 bp upstream