rs48588036 SNP Detail

Summary

• ID
  rs48588036
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97954580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCACCA GAGCGAAGGC
  TTTGTAGATA AGAGGAATCA GGCTAAGGAC AGTGATGAAG AGAGACCATT TCAGGCAAGA
  AAAACAGGAG CTGAGCCCTC CTCCCACTCC AGGAATGACA AGATGCTCTA CTGATTGGAG
  AGAGGGCTGA GGACAGAGTA GTAGTAGATT ATAGAATCAA AGACATAAAC ACAGATGTAT
  K
  CGAGGGGAGA AAGGGAGGCA AGCAGCACAT GCACACATGC ACATGCATGC ACACACATGT
  ACACAAACTT CTCTGACCTT GTCTGTGGAT CTCCATCCCC AACACCCCCT GCCTGGGGAA
  GGTCGAGTAG TCCTTGGCAA GCCTCTAAGT TCAACTTCCT CTTTTTCCCT TCCCTTTTTC
  CTGATATGAA CATGGGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61683850	NES17636106	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	T	G	G		G
ss324132351	CHEV_12_99226531	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48588036					SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61683850	NES17636106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97954580 () rs orientation: forward

Symbol	Name	Function Class
Rr387674	regulatory region 387674	within coordinates