rs48588210 SNP Detail

Summary

• ID
  rs48588210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59652484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAATAGGT CCTGACCTGA CCTGGCTAAA TTATTCTAAA
  TTCTCACACC TATTATACTA CTAAAAAACT AAGAATACAG GGACAGGCCA TACACACCGA
  Y
  AACCTCTAGA TTCCTTCTCC CCCTACCCCA TCTTCCAAAT ACCAGAATTC ATGGAAAAAT
  TCAACTCCCC GCTTCCCCCC ACCTTCCATT ATCAAAGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61014596	NES16116683	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	T	C	T	C	C
ss144685535	ENSMUSSNP6003889	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48588210					SNP	T	C	T	T	T	T	T	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014596	NES16116683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59652484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	1572 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	928 bp upstream
Rr647544	regulatory region 647544	438 bp proximal
Rr647545	regulatory region 647545	939 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	953 bp upstream
Tssr66969	transcription start site region 66969	1685 bp upstream
Tssr72702	transcription start site region 72702	247 bp downstream
Tssr72703	transcription start site region 72703	325 bp downstream
Tssr72704	transcription start site region 72704	402 bp downstream
Tssr72705	transcription start site region 72705	428 bp downstream
Tssr72706	transcription start site region 72706	1230 bp downstream