rs48589261 SNP Detail

Summary

• ID
  rs48589261
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:44215601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTGCCTG GGTCAACAAA GCCACCCCTG CCCACCCTTA
  GCTGTGAGCC TTCTCAGTGG GCCCTTCTAC ACTATTTTCC TTATCTGGGG GGGGGGGGGG
  G
  ATGGCTGTGT TTGCCTCCTA GGGTTCTTGT TAAGATTTAA ATGCAGGCCA AGTGTCTCAG
  GAGTGCAGCT GAACGCTGGT AATAGGCAAA GGCGGTAGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148061313	ENSMUSSNP1680309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325162681	CHEV_16_44395351	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48589261					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:44215601 () rs orientation: forward

Symbol	Name	Function Class
Cfap44	cilia and flagella associated protein 44	within coordinates
Rr516304	regulatory region 516304	429 bp distal
Rr516305	regulatory region 516305	within coordinates
Rr516306	regulatory region 516306	1238 bp proximal
Rr516307	regulatory region 516307	1885 bp proximal
Tssr138551	transcription start site region 138551	434 bp downstream
Tssr138552	transcription start site region 138552	412 bp downstream