rs48589592 SNP Detail

Summary

• ID
  rs48589592
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTTTT CAGTTGTGTG
  CCGATCTCTA GCATGGCGTT GGCTTGTAGG AATAGCTTCG CGCTGGACAT TGTGCTCAAG
  GTCCTGGTCC AGAAAGTTCA TTTTGTTGCA ATATTTAACC TGAAATCACT TGATAGGGTA
  TGTGACTTGA GCCTTCGTTT GTTTTGCCGG CGTTGAAACC ATCTCATTAA GGCCTCTGTC
  S
  ATAGTAAGTT GTAACATTCA CTAGCGCTCG CAGGTGATCT ATCTAAAGTG TACACTTCAA
  AGGTTTTGTT TTAGTGTTTT TGTAGACGGT GCATTTATCA TCACAGTCAG TTTGAGAACA
  TTTTCATCAC TCCAAAAGAA AAAACAACTG TACCTTTTAA CTGTTGCCCC CACCCCTCGC
  CATCTCTCAC TAGCCGTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147535311	ENSMUSSNP923953	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48589592					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	93 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1034 bp distal
Rr564564	regulatory region 564564	885 bp distal
Rr564565	regulatory region 564565	7 bp distal
Rr564566	regulatory region 564566	536 bp distal
Rr564567	regulatory region 564567	210 bp proximal
Rr564568	regulatory region 564568	1957 bp proximal
Tssr20024	transcription start site region 20024	854 bp downstream
Tssr20025	transcription start site region 20025	838 bp downstream
Tssr20026	transcription start site region 20026	687 bp downstream
Zfp661	zinc finger protein 661	1023 bp upstream