rs48589616 SNP Detail

Summary

• ID
  rs48589616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127202912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAGCCCC GAGACAGCCC
  ATCCCATCCG CCAGCCCCTT CCACGCTTGT GAGTTGCATC ACTCTGAGCC CTGGGTTGCA
  TTGGAGCAGG TGGTGTACAG AGTCAGGAAC TGTTGTTTTC TTACAAGATA TTTTTGGGTG
  GTCTGGTTCC TTCTGTTTCT AGCAGACAGG GTAAAGCAGC CTACACTTGC ATTTAGATTT
  R
  TTCACAACCT GTATGTAACA GAAGCACAGC AGTGACTGGA GACCCACTCC TGAGTCAAGA
  TGCCAATGCT ATGGGAGTGA CCTCATCTGC AAAAGCCACC GACACTGCCC AAACCACCTT
  GCAACACATC ATCCATCTCG TGCATGCATG CGTGTGCCTG TGCGTGAGTG TGTGCGTGTG
  TGTGTGTGCA TACTTTAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135862647	ENSMUSSNP4870616	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320953860	CHEV_3_127112181	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48589616					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127202912 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	348 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	1965 bp distal
Rr584773	regulatory region 584773	307 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	376 bp upstream
Tssr35572	transcription start site region 35572	282 bp upstream
Tssr35573	transcription start site region 35573	255 bp upstream
Tssr35574	transcription start site region 35574	220 bp upstream
Tssr35575	transcription start site region 35575	199 bp upstream