rs48590590 SNP Detail

Summary

• ID
  rs48590590
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86142356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCGTT CTGGTGCCCC
  TTCTAGATCG CCTTTTAAAC ACTGGTTATG GAGACTCTCT CATGCTGCCC CCCACCCTGT
  GTGTGTGTGT GTGTGTGTAT TTATCTTGTG GGTGGGGGCA GTGGCACTGG TGTCACAGCA
  TGCATGTAGA ATCAGAGGAT AACCTGTAGG AAGCAGGTCT CTCCTACCGT ATGGATCCTG
  K
  ACCTCAAACT CAATCAAGTC TTCAGGTTCT GTAGTGTCTA ACTCACTCAG CCATTTTGCT
  GAGCCATATA TGTATATACA TATATCATAT GCAAGTATAT GAGTATATGA GATATTTTAA
  TATATATTTC TAAGTAGAAT TTTATCCATT CATCTTACAT TTAATATGTA CTTTCCAATA
  CAAAAACTAT CAAGCTAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52450480	NES15424487	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48590590					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450480	NES15424487	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86142356 () rs orientation: forward

Symbol	Name	Function Class
Ift43	intraflagellar transport 43	within coordinates
Rr258280	regulatory region 258280	645 bp proximal
Rr268782	regulatory region 268782	1646 bp proximal
Rr269813	regulatory region 269813	98 bp proximal