rs48594140 SNP Detail

Summary

• ID
  rs48594140
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCCAAT GATCTGTGCT
  TCTTAAAAGA TACTTGTAGG GTCCAGAGGG ATAGCCGGCC AGTTGAGAGC ACCTGCCGTC
  CTCGCAGAGG ACCTGAGTCC AACTCTCAGT ATGTGGCTAC ACATAGTGTG AATATATACA
  TTTTTTTTTA AAGTCGTCTT TAAATGCCTT GACTTGTGGC TTTCTTTTAA CTCTGTTAGT
  A
  TTAAAACTCC ATATGACCAT TTTTGAACAC AAGAATTGAG GTGAACCTGA ATCTATGCTT
  TTTGGGTCAT GGCTACTCAT ATTTGGCTCC AGAAATGTCT CTTACTACCC TTGAGGTGAG
  AGCTGTGTTC TTGCTTTGAC ACTGGTGTGA GATCTTCATT GTGCATAGAG TTTTCTCACA
  GTAAGCACTT CACTTAATTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137738426	ENSMUSSNP836994	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48594140					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655213 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	787 bp downstream