rs48594561 SNP Detail

Summary

• ID
  rs48594561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167759912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGTTTCT GGTTTAAAAG ACAAAGACTC CATCTAGTGG
  TTGAATGAAA CATCGCAGCT CCTGTGTCAC AATTTCAAAT TGAAGAACTT TATTAAAGGA
  Y
  TACAGCATTA GGAGGGTTGA GAACCACTGC TGTAAACTGA ATGTATCCCT CCTGCCCCTA
  TACACAGCCC TTCATAGGCT ACAGTGGCAC TTCACAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146052771	ENSMUSSNP7066780	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48594561					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167759912 () rs orientation: forward

Symbol	Name	Function Class
Rr422779	regulatory region 422779	1768 bp distal
Rr422780	regulatory region 422780	within coordinates
Rr422781	regulatory region 422781	56 bp distal