rs48595417 SNP Detail

Summary

• ID
  rs48595417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72344654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCACAT GACAGCTCCA
  GTAACCTACC TCCAGGAATT TCTAACTCCA GTTCTAGGGG AGCTGATAAC ATCTTCTGGT
  CTTTGTGGGC ATCAGGCACA TAATGGCGCA TAGACACTTT ATTTACGTAA AGTTAAATCT
  CAAAAAGTTC TTAAGAAAAA AAGATAAAGT ATGATTGTGA AAACACGTAG AGTCTTTAAC
  R
  ATGTTGATTT CACAGAAACT GTAAGCAGAT TGGTGATGAC AGGGGCTAGG GCAGGGGGAA
  ATGGCGAAGG GCTAGACTGC AGTTAGCAAA ATATAGTCAG AAGTACAGGG GTGCACAGCC
  AGGTGGGGGT GTAGGATGGT AATATGCTGT ACATTACAAA AAAAAACCAC ACAGAGGAAA
  AGATTGTTTA ACCCTAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136620984	ENSMUSSNP3910931	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48595417					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72344654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	646 bp proximal
Mns1	meiosis-specific nuclear structural protein 1	622 bp upstream
Rr401506	regulatory region 401506	1006 bp upstream
Rr682742	regulatory region 682742	673 bp proximal
Rr682743	regulatory region 682743	1174 bp proximal
Tssr85997	transcription start site region 85997	613 bp upstream
Tssr85998	transcription start site region 85998	1147 bp upstream
Tssr85999	transcription start site region 85999	1162 bp upstream
Tssr86000	transcription start site region 86000	1207 bp upstream
Tssr86001	transcription start site region 86001	1237 bp upstream
Tssr86002	transcription start site region 86002	1471 bp upstream