rs48595941 SNP Detail

Summary

• ID
  rs48595941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19228565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAGGTTA AAAATAACAT
  GTCAAATATT CTAGCCTAAA TCTATAGTAG CAAAAGGATG AAAAGCAAAA TATTTTGAAT
  TTTGCTTTTA TTTGATTTGT TTCTTTCCCT TGTATTTCTT CTGTAGAGCC AAAGCATTGG
  TTTTGTCTAT TTCTTTCCTA ATTCAGTGTG AACAAATTTT TGTCGACAAT TTAACCTTTT
  Y
  TCCCTTATCA ACTATCTGTG CATTACTTAG CAGATTTATG AGTTTATCAC TATTTCTATT
  GTTATTATGT CCTGAATTGA TAACCAACTC AAAACAATAT ATATACTTTT ATATTTATAA
  TCTTGTCAGT AAACGTTATC ATTGCTGTGT AGAAAAATAT CTGTAATACA TTATATCTAG
  TTCTTGTTTT CAAAGCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63674941	NES17060080	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48595941					SNP	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63674941	NES17060080	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19228565 () rs orientation: forward

Symbol	Name	Function Class
Gm25762	predicted gene, 25762	1343 bp upstream
Or2m13	olfactory receptor family 2 subfamily M member 13	within coordinates