rs48597295 SNP Detail

Summary

• ID
  rs48597295
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90946063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT CCTCCCCACC CCCTCATTAG
  C
  CACTAAAGAC AAGTAAAATT ATTGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146922384	ENSMUSSNP7164767	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320391692	CHEV_2_90955875	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48597295					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90946063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	88 bp distal
Rr560650	regulatory region 560650	1547 bp distal
Rr560651	regulatory region 560651	508 bp distal
Rr560652	regulatory region 560652	445 bp distal
Rr560653	regulatory region 560653	1936 bp proximal
Spi1	Spi-1 proto-oncogene	mRNA-UTR
Tssr18851	transcription start site region 18851	1435 bp downstream
Tssr18852	transcription start site region 18852	1375 bp downstream
Tssr18853	transcription start site region 18853	547 bp downstream
Tssr18854	transcription start site region 18854	505 bp downstream
Tssr18855	transcription start site region 18855	328 bp downstream
Tssr18856	transcription start site region 18856	280 bp downstream
Tssr18857	transcription start site region 18857	164 bp downstream
Tssr18858	transcription start site region 18858	121 bp downstream
Tssr18859	transcription start site region 18859	16 bp downstream
Tssr25158	transcription start site region 25158	27 bp downstream