rs48597839 SNP Detail

Summary

• ID
  rs48597839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT ACTCATGCCT TTCTTTTACG
  R
  AGAGGAGAGA GGAATCTGTT TCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148221309	ENSMUSSNP4895061	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48597839					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118273 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	759 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	395 bp downstream
Tssr21550	transcription start site region 21550	283 bp downstream
Tssr21551	transcription start site region 21551	749 bp upstream
Tssr21552	transcription start site region 21552	793 bp upstream
Tssr27409	transcription start site region 27409	357 bp upstream
Tssr27410	transcription start site region 27410	327 bp upstream
Tssr27411	transcription start site region 27411	302 bp upstream
Tssr27412	transcription start site region 27412	275 bp upstream
Tssr27413	transcription start site region 27413	260 bp upstream
Tssr27414	transcription start site region 27414	248 bp upstream
Tssr27415	transcription start site region 27415	229 bp upstream
Tssr27416	transcription start site region 27416	724 bp downstream
Tssr27417	transcription start site region 27417	733 bp downstream
Tssr27418	transcription start site region 27418	804 bp downstream
Tssr27419	transcription start site region 27419	814 bp downstream
Tssr27420	transcription start site region 27420	834 bp downstream
Tssr27421	transcription start site region 27421	858 bp downstream
Tssr27422	transcription start site region 27422	876 bp downstream
Tssr27423	transcription start site region 27423	914 bp downstream
Tssr27424	transcription start site region 27424	944 bp downstream
Tssr27425	transcription start site region 27425	965 bp downstream
Tssr27426	transcription start site region 27426	1223 bp downstream
Tssr27427	transcription start site region 27427	1901 bp downstream
Tssr27428	transcription start site region 27428	1947 bp downstream
Tssr27429	transcription start site region 27429	1973 bp downstream