rs48598114 SNP Detail

Summary

• ID
  rs48598114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAG ATCTTGGTGG CTGGCTTTAG
  R
  AATGTAATGG AACGGTTTTT AACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146140246	ENSMUSSNP820091	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320111975	CHEV_1_172573696	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48598114					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	605 bp proximal
Olfml2b	olfactomedin-like 2B	967 bp upstream
Rr14047	regulatory region 14047	934 bp distal
Rr28935	regulatory region 28935	266 bp proximal
Tssr280	transcription start site region 280	779 bp downstream
Tssr9927	transcription start site region 9927	714 bp downstream
Tssr9928	transcription start site region 9928	884 bp upstream
Tssr9929	transcription start site region 9929	925 bp upstream
Tssr9930	transcription start site region 9930	958 bp upstream
Tssr9931	transcription start site region 9931	1007 bp upstream
Tssr9932	transcription start site region 9932	1024 bp upstream
Tssr9933	transcription start site region 9933	1220 bp upstream
Tssr14922	transcription start site region 14922	763 bp downstream
Tssr14923	transcription start site region 14923	814 bp downstream