rs48598853 SNP Detail

Summary

• ID
  rs48598853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTACCCAA ATCCCACCAC
  ATGATATTTA CAAGGAGAAG CAATTGCTCA AGATGTACAA AATTAGTAGA CTCCAGACTC
  CAGTAGAATT TTCTTCATAA TGAGTTGACC ATTTCTTCAT TTGATTCCTA GATTAACCAT
  CTGTGAGCCA GAAAAGTTTA ACAACAATTA TTCTGCATGG AAAATGTAAA CCTCAAAAGC
  Y
  AATTAAAACA TTTCAAAGTC AATTAAAAAC ATCTCAGGCC TAGCAATCCA GCCAATTCTA
  TAGCTACAGC TCCTAAGCAG TCCAATATTA TTTCTGATAA TATTCTCTTT TTATTCCCTA
  CGAAGATTGG CCACTTAATG GCAGAATGGT GCAGAAATGA TACCTGAATG TGAAATTTAA
  ATATGTCTTT TGTGTCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ
ss62937148	NES17409712	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ
rs48598853					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937148	NES17409712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114877 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	within coordinates
Rr393006	regulatory region 393006	128 bp upstream
Rr531544	regulatory region 531544	636 bp proximal
Rr531545	regulatory region 531545	1667 bp proximal