rs48598871 SNP Detail

Summary

• ID
  rs48598871
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCAGGTG GTATTTCAGC
  CAGAGACAAG CTTATTACAT GCCTTCTGGC TGGTCTTAGA AAAGCAACCT TAAAGCCAGT
  AAATTTGGAA AAACTCCAAG AGGTTTTCCA GGACAAGCAG GAGAGCCCAT CTCAGTTTTT
  AGAACGCCTC ACAAAGGCCT TATTACAATA CACTAAGTTG TTACTAAGGT AAACAATTTT
  W
  GATGACCTAC TTTTTTCCCA GAGCTGCCCC AACATAAAAG CTAAACTTAG GCATTTGGCG
  AGGGGGCCTC TAACTCCATA GGCGGAAGTC TTGGCGATGG CCTTCAAGGT GTACCATGAG
  AGAGATGAGA AAGCCCAAAA ACAAAAACAC TGCAAGCTGG CAAAGGCTGT CCGACCAGCT
  CTAGCTACTA CCCCGAACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668098	ENSMUSSNP5523547	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss323016425	CHEV_9_78370767	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48598871					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22070	CpG island 22070	1838 bp distal
Gm47430	predicted gene, 47430	803 bp downstream
Rr206776	regulatory region 206776	841 bp distal
Rr383643	regulatory region 383643	1483 bp upstream