rs48599336 SNP Detail

Summary

• ID
  rs48599336
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAATAGAACA TTATGTTAGA TTTAACTCTT AAAACCAAAA
  GTCAAATAAA ATATATAGAA AATGCTTAGT TGCAGAAGTT TGTAATTGCA AAAAGGCTTC
  G
  AATGGAGTAG AGAACCCCAG TTGTGCATGT TGATAGGCCA TTTCTACAGG AAACATGAGA
  CCTACACCAG AGACTCTCTG GATGAAAAAT ATGGGAGACA T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136830322	ENSMUSSNP5422649	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48599336					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142803 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1516 bp downstream
Tssr86591	transcription start site region 86591	1965 bp downstream
Tssr86592	transcription start site region 86592	1948 bp downstream
Tssr86593	transcription start site region 86593	1920 bp downstream
Tssr86594	transcription start site region 86594	1737 bp downstream
Tssr86595	transcription start site region 86595	1489 bp downstream
Tssr86596	transcription start site region 86596	1473 bp downstream