rs48599724 SNP Detail

Summary

• ID
  rs48599724
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20414083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT CCATTTACCT CTGAACTACA
  W
  CCCAGGGAAA GGTGTTTTTA TTTAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146173113	ENSMUSSNP832413	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss325739988	CHEV_19_20511209	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48599724					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20414083 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	630 bp distal
Gm32689	predicted gene, 32689	1464 bp upstream
Gm41816	predicted gene, 41816	1035 bp upstream
Rr356916	regulatory region 356916	1683 bp distal
Rr356917	regulatory region 356917	318 bp proximal
Rr361508	regulatory region 361508	331 bp proximal
Rr364130	regulatory region 364130	1813 bp distal