rs48600164 SNP Detail

Summary

• ID
  rs48600164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144148985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGGCTC ACTAAAGGAG
  TTAGCCATCA CAGCTGACCA TCTGAGTTTG GACACCTGAA CTCACATGGT GGAAGAACAT
  AAAGAATTGG TTCCCATTGG TCCTCTGACC TCCAAACTCA CACATGGCAT GCATAGGCAG
  ACATCCACAC ATATACCTTA TGTGCGCTAA ATAAATGTTG AGCGGGAACA TACTGGGGGG
  K
  GGGGGGAGAG GCACAAGGTG GTGTCAAGAG GACACTTGGC ATCATTGGCC TACCCCTTCC
  TATCACATGT GTACGATCAC ACATGCACAC ACACACACAC ACAGATGACT AGCTGTGTCA
  TTTTTTTTTT CATTTTGTTT TTTAAATGAA ACATTGCAGG CAGTGGTATT CTGTAATCCC
  AGTTAGAGTG TGAGAGCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147790733	ENSMUSSNP239197	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48600164					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144148985 () rs orientation: forward

Symbol	Name	Function Class
Ovol2	ovo like zinc finger 2	Intron
Rr566440	regulatory region 566440	967 bp distal
Rr566441	regulatory region 566441	1173 bp proximal