rs48600775 SNP Detail

Summary

• ID
  rs48600775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30257472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCTCCAT CTCTGAGGGT AGAAGGTAGG AATCAGCTCT
  GTGTGCGCCT CCCACATTCG CCGTGGGAGG CGATCCTACG TCCTGTCTGG TCCAGTTACT
  Y
  GGAAAGCAGC TTTAGTGCCA CTCAGTGGAG AGACCAACTA AAGACAGAAC CAGGGTGACA
  GAGCCTTAGG CGGGGCCAAG GGCACAGCTG CTACCACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990769	NES16136575	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	T	T		C	T	C	T		T
ss322135257	CHEV_7_31343066	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48600775					SNP	T	T	T	T	C	T	C	C	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990769	NES16136575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30257472 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Rr400243	regulatory region 400243	1548 bp upstream
Tssr71791	transcription start site region 71791	695 bp downstream
Tssr71792	transcription start site region 71792	726 bp downstream
Tssr71793	transcription start site region 71793	1451 bp downstream
Tssr71794	transcription start site region 71794	1553 bp downstream
Tssr71795	transcription start site region 71795	1781 bp downstream