rs48601240 SNP Detail

Summary

• ID
  rs48601240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGCAGC GGGCGCTCAG
  CTGTGCCTGG GTGTGCTGTT GGCTGCTTGT GCCTAGGAAG GAATGCAGGC TCTCTGTCGC
  TTGTTCCTCC CCTTTTGCCT CCTCTCCCTA AGCATCTCTG AGTGACCATG CCTATTTCTC
  TCTGCTTCCT AGTGTGTGTG GCTTGTGGGA GCCCTGGGCT CATTTCCTGG TCTCTCTGCC
  R
  TAGTGTGCAT TTCTAGAAAT GGTTTAAAAA TTCTCAGCGA CTGGTAAGAG AGAGAAATCG
  AGTTTCTTTT TCTTTTTTCT TGCTAGCCCA TCATATAAGG GTAAACTGGG GGGCATGAAA
  GTAAAACAAC GAATGGTTTT GCTTTCCTTT AATCCGTGCA TTGAGGAAAA GGTTATGGTG
  TAGCTGGTAT ATCAGACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874514	ENSMUSSNP5144565	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320958006	CHEV_3_127600431	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48601240					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	990 bp distal
Fam241a	family with sequence similarity 241, member A	1190 bp upstream
Rr398009	regulatory region 398009	940 bp downstream
Rr584896	regulatory region 584896	1494 bp distal
Rr584897	regulatory region 584897	699 bp distal
Tssr35607	transcription start site region 35607	2000 bp upstream
Tssr35608	transcription start site region 35608	1280 bp upstream
Tssr35609	transcription start site region 35609	1243 bp upstream
Tssr35610	transcription start site region 35610	1176 bp upstream