rs48601938 SNP Detail

Summary

• ID
  rs48601938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57880350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGAATTCT TCATATTCAA TATTCCAAAG CTTGTAAACA
  AAATTAAGTT GTACTTAGTA GAAGGTATTT GTGGATGTTT TGGGAATTAC TAGAAAAAAA
  R
  AAAAATTTTG TGTTACTTTT GTGTGTTATT TGACATAGCT GTCTCCAGGT GTAATGTGGA
  AAACATATAT ATATATAGTT GAGGGGAACT TCTGACTATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61167726	NES16674382	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48601938					SNP	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61167726	NES16674382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57880350 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	1385 bp upstream
Pcdh7	protocadherin 7	within coordinates
Rr125227	regulatory region 125227	within coordinates
Rr125228	regulatory region 125228	650 bp proximal
Rr125229	regulatory region 125229	1850 bp proximal
Tssr46294	transcription start site region 46294	1133 bp downstream
Tssr46295	transcription start site region 46295	999 bp downstream