rs48602073 SNP Detail

Summary

• ID
  rs48602073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43209856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACCCTG GGCTTGATAT
  CCTGCACTGC ATACATTATA CTCCTGTAAT CTAACCACGC AGGAGGTGGA GGCAGGAGGA
  TCAGAACTTG AGCTGATCTT TGGCTTCACA GGAAATTTGA GGCTAACCTG GGGCACATAA
  GACCCTATTT ATAAATAAAT AATTGCTTAT GCTCTTTCAC AGTCATTTCC AGCTCAGCTC
  Y
  TTCTTTGGGA TTTGGGTGAC ACCTATAATC TCACCATCAC GGGACCTCCT CTCTCACATG
  CAGCTCCAGG AATTTATTAT GAACTTCCTT ATTTATCCAC CCTCACTTCC ACTCTTTTCT
  GGAAAATTCT GTTCTCCACC TCATGCTTAA AACATCTCAG GTCCAATTTA AGGTGTTGTG
  CCCTGAGTAC TGTAGCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002053	NES16129056	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48602073					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002053	NES16129056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43209856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18937	CpG island 18937	1692 bp proximal
Gm44818	predicted gene 44818	887 bp upstream
Rr645990	regulatory region 645990	1444 bp proximal
Rr645991	regulatory region 645991	1835 bp proximal
Tssr66014	transcription start site region 66014	1827 bp upstream
Tssr66015	transcription start site region 66015	1859 bp upstream
Tssr66016	transcription start site region 66016	1896 bp upstream
Zfp175	zinc finger protein 175	1824 bp upstream