rs48602869 SNP Detail

Summary

• ID
  rs48602869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57489763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTGAAAG TTGGCATAAA
  CACAAACCTC TTGTTTCATT GCTTCTCCCA AACAAACAAG GTTGGGTAAG AGTGCCTTCT
  TCATCCAGCA CCCTGCAGCC TGGTTCTTGT CTTCCTCTCC AGGGAGGCCC ATGAAGCAAA
  CATTCATAAA GGTGGCTAGT TCTGGCAGGC ATGGCCTTGG CCATTTACAA AGCACATCTA
  R
  GCTGGTTATA TGGATGCTAC AGCCCCACAC AACAGGACCG AATGGGGAGT CCAGAAGGGA
  GAAAGGGGAA AACATTAGGA AGCTTCAAGG GATCGCATAG ATCATCCTTA ACCTTGGGCA
  AACTCAAGAT AAAGAGGCTT AGTCCCCTTC CCACTGTTAT AACAAACACT GGAGGCTGGA
  TAAACTAGCA CAGTTCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62409666	NES17244597	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48602869					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62409666	NES17244597	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57489763 () rs orientation: forward

Symbol	Name	Function Class
Tssr128959	transcription start site region 128959	267 bp upstream