rs48603869 SNP Detail

Summary

• ID
  rs48603869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41443188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGGTCT TAGCTGTCAG
  GTTAGGGGGT TGGGCTTAGC CCATGAGGCA GCAAGAATTC CAGGGATTCA GACAGCTGAC
  TGCTGACTGC TGAATAAATA GGCTCATACA AAACAAGGGT TTGTTTTGCT TTCTGGGAGC
  CTAATTGTTC TCCAAGTTAT GACGATCTTT CCCAGAAAGT GAAGACTGGC TGACAGCGCC
  R
  AGCTGGTTCT GACTGCAGTG TGGGCCTGCA CCTTGTAGTT ATCCTGTCCC TCATCCTTCA
  GCAAGTGCAG GCCACTGGGT CCTTTACTTA ATAAACAAGA GGATGGGGGG AGTTGGACAT
  GTGGATCTGC CTCTTTATAC CACGTGACTA CCTAGCAAAA AGACAAGAAG GAGTCTTATT
  TAAGACAGAT AAAACAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386543	NES16765688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48603869					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386543	NES16765688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41443188 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	within coordinates
Mir100	microRNA 100	388 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	463 bp proximal
Rr677057	regulatory region 677057	964 bp proximal
Tssr84510	transcription start site region 84510	393 bp downstream
Tssr84511	transcription start site region 84511	106 bp upstream