rs48604278 SNP Detail

Summary

• ID
  rs48604278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:101438673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT GCTTACTGGC TTGCTTCATA
  Y
  GGCTTTCTCA GCCTGCTTTC TTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146736162	ENSMUSSNP3293290	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss324798531	CHEV_14_101600454	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48604278					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:101438673 () rs orientation: forward

Symbol	Name	Function Class
Prr30	proline rich 30	907 bp upstream
Tssr130025	transcription start site region 130025	914 bp upstream
Tssr130026	transcription start site region 130026	819 bp upstream