rs48604866 SNP Detail

Summary

• ID
  rs48604866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100894260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTATGAA TTGGTCACCA GCCCCTTCCT TTACATACAC
  TTAAACCGGA TTCCTTTTAC TGGAGCATCC TCTTCAATAA CCACGCTGGA AGTGGTTAGG
  R
  TTAGGGTTAG TGAACGCTGG AAGCGTTAGC AGTTGGTGCA CCGGCTTCAG CTCTATGTAT
  ACGGATGCAA TGAATGAGGT CCGAAGCCAC ATACACAAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52685856	NES15521436	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48604866					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685856	NES15521436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100894260 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	1922 bp downstream
Rr269996	regulatory region 269996	660 bp distal