rs48606050 SNP Detail

Summary

• ID
  rs48606050
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATTGAGCA GTAAGCACTC TTATCCACTG AATTATCTCT
  CTAGCTCCAA AAAGTACCTC TTGACCTCAT ACATAATGAG GATTATTTTT CTATTATGGG
  S
  ATAGAGGAGT GGGTACAAAC CCCAGGTGCC CAAGTCACTA AACACATCCA CATGCACCAT
  TAAACAGCAT GTCACATCCC CCAGCTGAGT GACTGAGAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132135301	ENSMUSSNP5165197	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48606050					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	732 bp proximal
Gm30927	predicted gene, 30927	1342 bp upstream
Rr447212	regulatory region 447212	807 bp distal
Rr447213	regulatory region 447213	558 bp proximal
Rr447214	regulatory region 447214	1231 bp proximal
Rr447215	regulatory region 447215	1633 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1336 bp upstream
Tssr101465	transcription start site region 101465	1355 bp upstream
Tssr107965	transcription start site region 107965	1198 bp downstream
Tssr107966	transcription start site region 107966	1260 bp downstream
Tssr107967	transcription start site region 107967	1582 bp downstream
Tssr107968	transcription start site region 107968	1607 bp downstream
Tssr107969	transcription start site region 107969	1665 bp downstream