rs48606392 SNP Detail

Summary

• ID
  rs48606392
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135692910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG ACCTTATATG ATGGAAGACA
  C
  AGTAGGAAGA GAGAAATAAC TGAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145545500	ENSMUSSNP3046073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319993126	CHEV_1_137661749	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48606392					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135692910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	367 bp proximal
Gm70736	predicted gene, 70736	177 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	947 bp upstream
Rr372092	regulatory region 372092	99 bp upstream
Rr419268	regulatory region 419268	945 bp distal
Rr419269	regulatory region 419269	457 bp proximal
Tssr223	transcription start site region 223	898 bp upstream
Tssr224	transcription start site region 224	1017 bp upstream
Tssr8974	transcription start site region 8974	913 bp upstream
Tssr8975	transcription start site region 8975	1035 bp upstream
Tssr8976	transcription start site region 8976	1046 bp upstream
Tssr8977	transcription start site region 8977	1065 bp upstream
Tssr8978	transcription start site region 8978	1069 bp upstream