rs48606453 SNP Detail

Summary

• ID
  rs48606453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84563740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCAGGG CCCTGTGTTT
  GGCAAGCCCA GATCTACACC CCCCCCCCCA GCCTCTTTCC TTTGGTTCAT CCAGTGTGTG
  CTAATCGCTG TAGGCTATGC TGCGTGCTCC GAGTAGAAGG AAGTGATCCA ATTAATCTAG
  ACAAGGATCC CGCTTCCTTA AGCATGTGGC CGGTCAGAGA GCTTGTCTAG GTCACACAAC
  Y
  GGAACATGAG GAGACAAAGA CCCCAGAGTG CAACTTAAAT GGTTCACTGT TGCTGTAGTC
  TCCAGTTATT ACCTCGGAGG ACCTGTGTCC TCTTGCAACT GCTCAGTGAT TCAGGAACCC
  CAGACTGCCA TGAATCAACA GCTGGCTCTG GGTTGAGTAG GGGACTCCTG AAGGAGGGGG
  ATGAAGGTGA CATTATTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135427364	ENSMUSSNP6453275	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48606453					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84563740 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Gm64927	predicted gene, 64927	1812 bp upstream
Rr68541	regulatory region 68541	340 bp distal
Rr68542	regulatory region 68542	1661 bp proximal