rs48607281 SNP Detail

Summary

• ID
  rs48607281
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50583208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACAGAAG CAGTGGGGAT
  TCTGTTGGTC CTCTAAAAGA GTTGTCCAGG TTCTCACAGG TCATGCCCCT TGCTCCTGTC
  TTATATCTGT GTCTAAGTCT TGACTCCGCT GCTTCTGGGA ACTAACTTCC TTCCAGAAAC
  ATCAGTTTGA CCCAGGTCAC CAAAATTGAT TTGTATCGTT TCTTTAGTAG GTCCTGCTGA
  C
  ATGAAATTTT AAACAAAGAG CCTGATGTTC ACGAAGCAGT TTAGATGGAG ACAATGAAGT
  CTCAGGTATG TGTCCCAGTC AGATTTTTAC TTCCAGGTCA TATGCCTCAA AACTATTTTG
  TATTACAAAG TTAGTCTTTG AAGTGTTTTG GTTTTGTTGT ATTAGTATTG TGGACTCCGT
  GGGCTATTTG TCCATAACAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146533699	ENSMUSSNP3195424	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320289762	CHEV_2_50548716	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48607281					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50583208 () rs orientation: forward

Symbol	Name	Function Class
Rr556759	regulatory region 556759	616 bp proximal
Rr556760	regulatory region 556760	1684 bp proximal