rs48607867 SNP Detail

Summary

• ID
  rs48607867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCACTG CTCCAGACTG
  CAAATCAGAT TCGATGTTTC CTGGGTCTAG GTAGGCAATG CTCATAAGAA AGCCAGGCCC
  CGTGAACGCC CAGAGTTTAC GAAAGCTAAA ACAAGAGTAC TATAAAGGAG AGAGGAGAGC
  GGTCTGAGTG TCACCCGTCC TAACGTCTCT ATTTTATCAC ACATCACGGA GCGACCCCAG
  Y
  GGCACAGGGC CAGGGTGGGC TCTGCGCGAG TCCCCATTTC ACATCCAGTT CGTCCACTTT
  TTACCAATAA GATGGCCTCT TCTCTCAGTG GGAGTCCTTC CTTTATCTGC TCTCCATAAG
  CAACTTGGTC CAAACTGAAC CCACCCACTT CCCACATAGG AGCAAAACCA CACTTGAAAG
  AGAAGAACAC AGGGGCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148475072	ENSMUSSNP5335518	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48607867					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307288 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	1203 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	752 bp downstream