rs48608259 SNP Detail

Summary

• ID
  rs48608259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137723034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TCTACCTAGC TTCACTTTCA
  W
  ACTTGCTTCG AATTCCGTTC TAATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147628403	ENSMUSSNP1042263	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss321369530	CHEV_4_137551638	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48608259					SNP	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137723034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15142	CpG island 15142	1237 bp distal
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	996 bp upstream
Rr86598	regulatory region 86598	1767 bp proximal
Rr100351	regulatory region 100351	within coordinates
Tssr39807	transcription start site region 39807	1990 bp downstream
Tssr39808	transcription start site region 39808	1790 bp downstream
Tssr39809	transcription start site region 39809	1617 bp downstream
Tssr39810	transcription start site region 39810	906 bp downstream
Tssr39811	transcription start site region 39811	105 bp upstream
Tssr44155	transcription start site region 44155	964 bp upstream